Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ABK71901.1[NiFe] hydrogenase, gamma subunit, putative; Identified by match to protein family HMM PF00175. (271 aa)    
Predicted Functional Partners:
ABK73021.1
[NiFe] hydrogenase, beta subunit, putative; Identified by match to protein family HMM PF00037.
 
 0.996
ABK69913.1
[NiFe] hydrogenase, delta subunit, putative; Identified by match to protein family HMM PF01058.
 
 
 0.982
ABK76036.1
[NiFe] hydrogenase, alpha subunit, putative; Identified by match to protein family HMM PF00374.
 
   
 0.970
ABK75673.1
Peptidase M52, hydrogen uptake protein; Identified by match to protein family HMM PF01750; match to protein family HMM TIGR00072.
 
    0.968
pyrD
Dihydroorotate oxidase; Catalyzes the conversion of dihydroorotate to orotate with quinone as electron acceptor; Belongs to the dihydroorotate dehydrogenase family. Type 2 subfamily.
  
 0.919
ABK70099.1
Ferredoxin-dependent glutamate synthase 1; Identified by match to protein family HMM PF00310; match to protein family HMM PF01493; match to protein family HMM PF01645; match to protein family HMM PF04898.
    
 0.809
ABK70243.1
Ferredoxin-dependent glutamate synthase 1; Identified by match to protein family HMM PF00310; match to protein family HMM PF01493; match to protein family HMM PF01645; match to protein family HMM PF04898.
    
 0.809
ABK76139.1
Pyruvate synthase; Identified by match to protein family HMM PF01855.
  
 
 0.807
carB
Carbamoyl-phosphate synthase, large subunit; Identified by match to protein family HMM PF00289; match to protein family HMM PF02142; match to protein family HMM PF02655; match to protein family HMM PF02786; match to protein family HMM PF02787; match to protein family HMM TIGR01369; Belongs to the CarB family.
  
 0.806
ABK73179.1
Pyruvate ferredoxin/flavodoxin oxidoreductase family protein; Identified by match to protein family HMM PF01558.
  
 
 0.794
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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