Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABK75611.1Probable conserved transmembrane protein. (191 aa)    
Predicted Functional Partners:
ABK73366.1
Conserved hypothetical protein.
 
  
 0.689
ABK74210.1
Acyltransferase, ws/dgat/mgat subfamily protein; Identified by match to protein family HMM PF03007; match to protein family HMM TIGR02946; Belongs to the long-chain O-acyltransferase family.
 
    0.680
ABK73981.1
Conserved hypothetical protein.
  
  
 0.658
ABK69884.1
Identified by match to protein family HMM PF00582.
  
  
 0.645
ABK75431.1
Nitrate/nitrite transporter protein; Identified by match to protein family HMM PF07690.
  
    0.613
ABK70132.1
CBS domain protein; Identified by match to protein family HMM PF00571.
 
     0.558
ABK70463.1
Conserved hypothetical protein.
  
  
 0.549
ABK75242.1
Probable antibiotic-transport integral membrane leucine and valine rich protein abc transporter.
  
     0.540
ABK70863.1
Conserved hypothetical protein; Identified by match to protein family HMM PF04075; match to protein family HMM TIGR00026.
  
     0.534
ABK71175.1
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.527
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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