Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
ABK75333.1Conserved 13e12 repeat family protein; Identified by match to protein family HMM PF01844; match to protein family HMM PF02720. (527 aa)    
Predicted Functional Partners:
ABK74231.1
Alkylhydroperoxidase AhpD.
       0.773
ABK70524.1
HNH endonuclease domain protein; Identified by match to protein family HMM PF01844.
  
     0.765
ABK73366.1
Conserved hypothetical protein.
 
     0.730
ABK75381.1
Conserved hypothetical protein; Identified by match to protein family HMM PF02720.
  
    0.702
ABK72418.1
Conserved hypothetical protein; Identified by match to protein family HMM PF02720.
  
     0.701
ABK70620.1
Endonuclease IV; Identified by match to protein family HMM PF01261; match to protein family HMM TIGR00587.
  
   
 0.640
ABK72735.1
Conserved hypothetical protein.
  
   
 0.619
ABK75217.1
Acyltransferase, ws/dgat/mgat subfamily protein; Identified by match to protein family HMM PF03007; match to protein family HMM TIGR02946; Belongs to the long-chain O-acyltransferase family.
  
     0.612
ABK75590.1
Virulence factor Mce family protein, putative; Identified by match to protein family HMM PF02470; match to protein family HMM TIGR00996.
 
     0.608
dnaG
DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication.
  
  
 0.595
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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