Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
ABK71714.1BmyD protein. (110 aa)    
Predicted Functional Partners:
ABK73964.1
Oxidoreductase; Identified by match to protein family HMM PF00296.
       0.482
ABK73215.1
N-carbamoyl-L-amino acid amidohydrolase; Identified by match to protein family HMM PF01546; match to protein family HMM TIGR01879.
       0.482
ABK70970.1
Putative pyrimidine permease RutG; Identified by match to protein family HMM PF00860; match to protein family HMM TIGR00801.
       0.460
hydA-3
Dihydropyrimidinase; Identified by match to protein family HMM PF01979; match to protein family HMM PF07969; match to protein family HMM TIGR02033.
       0.460
ABK70301.1
Identified by match to protein family HMM PF00903.
       0.454
ABK76062.1
Vanillate O-demethylase oxidoreductase; Identified by match to protein family HMM PF00111.
  
    0.447
ABK69618.1
Oxidoreductase, 2OG-Fe(II) oxygenase family protein; Identified by match to protein family HMM PF03171; Belongs to the iron/ascorbate-dependent oxidoreductase family.
       0.433
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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