Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABK74910.1Conserved hypothetical protein; Identified by match to protein family HMM PF07336. (201 aa)    
Predicted Functional Partners:
ABK73507.1
Lactoylglutathione lyase; Identified by match to protein family HMM PF00903.
 
     0.654
ABK72898.1
Conserved hypothetical protein.
  
     0.480
ABK75665.1
Integral membrane protein; Identified by match to protein family HMM PF00892.
 
   
 0.468
ABK72890.1
Conserved hypothetical protein.
  
     0.460
ABK71628.1
Oxidoreductase FAD/NAD; Identified by match to protein family HMM PF01243.
 
     0.458
ABK74572.1
Anti-sigma factor antagonist; Identified by match to protein family HMM PF01740; match to protein family HMM TIGR00377; Belongs to the anti-sigma-factor antagonist family.
  
     0.435
ABK76068.1
Hypothetical protein; Identified by Glimmer2; putative.
       0.432
ABK69743.1
TetR-family protein transcriptional regulator; Identified by match to protein family HMM PF00440.
  
    0.429
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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