Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
ABK73132.1Amidohydrolase 2; Identified by match to protein family HMM PF04909. (317 aa)    
Predicted Functional Partners:
ABK72899.1
2-hydroxy-3-carboxy-6-oxo-7-methylocta-2, 4-dienoate decarboxylase; Identified by match to protein family HMM PF04909.
  
     0.767
ABK74068.1
Transcriptional regulator, GntR family protein; Identified by match to protein family HMM PF00392; match to protein family HMM PF07729.
       0.704
ABK74649.1
Hydroxyquinol 1,2-dioxygenase; Identified by match to protein family HMM PF00775; match to protein family HMM PF04444.
 
  
  0.645
ABK71883.1
2,3-dihydroxybiphenyl 1,2-dioxygenase; Identified by match to protein family HMM PF00903.
 
  
 0.566
ABK73791.1
Oxalate decarboxylase OxdC, putative; Identified by match to protein family HMM PF00190; match to protein family HMM PF07883.
 
  
  0.560
ABK72679.1
Toluate 1,2-dioxygenase electron transfer component; Identified by match to protein family HMM PF00106; match to protein family HMM PF00111; match to protein family HMM PF00175; match to protein family HMM PF00970; match to protein family HMM PF07729; match to protein family HMM PF08021.
  
 
 0.539
ABK75057.1
Peptidase S15; Identified by match to protein family HMM PF02129; match to protein family HMM TIGR00976.
  
     0.502
ABK72951.1
4-carboxy-4-hydroxy-2-oxoadipate aldolase; Identified by match to protein family HMM PF03737.
    
 0.431
ABK73340.1
Monooxygenase; Identified by match to protein family HMM PF01266; match to protein family HMM PF01494.
 
  
 0.408
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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