Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABK74498.1GAF domain protein; Identified by match to protein family HMM PF01590. (595 aa)    
Predicted Functional Partners:
ABK75795.1
Two-component system sensor kinase; Identified by match to protein family HMM PF00989; match to protein family HMM PF01590; match to protein family HMM PF02518; match to protein family HMM PF07730; match to protein family HMM TIGR00229.
   
 0.822
ABK75069.1
Identified by match to protein family HMM PF07905.
 
     0.759
ABK76158.1
Regulator of polyketide synthase expression, putative; Identified by match to protein family HMM PF07905.
 
     0.719
ABK73960.1
Two-component system response regulator.
 
  
 0.699
ABK72878.1
Identified by match to protein family HMM PF07905.
 
    0.661
ABK74853.1
Transcriptional regulator, CdaR, putative; Identified by match to protein family HMM PF02954.
 
     0.660
ABK69990.1
Dihydropteroate synthase; Identified by match to protein family HMM PF00753.
       0.649
cheR
CheR methyltransferase, SAM binding domain protein; Identified by match to protein family HMM PF00989; match to protein family HMM PF01739; match to protein family HMM PF03705; match to protein family HMM TIGR00229.
    
 0.639
ABK75750.1
L-carnitine dehydratase/bile acid-inducible protein F; Identified by match to protein family HMM PF02515; Belongs to the CoA-transferase III family.
       0.637
ABK69773.1
Muconolactone delta-isomerase; Identified by match to protein family HMM PF02426; Belongs to the muconolactone Delta-isomerase family.
       0.634
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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