ABK69990.1 protein (Mycolicibacterium smegmatis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

ABK69990.1

Dihydropteroate synthase; Identified by match to protein family HMM PF00753. (321 aa)

Predicted Functional Partners:

folP

0.842

folP-2

0.842

folK

0.840

ABK69773.1

0.780

ABK75750.1

0.777

ABK71380.1

0.678

ABK74498.1

0.649

ABK70401.1

0.448

acpS

0.407

ABK73609.1

0.402

Your Current Organism:

Mycolicibacterium smegmatis

NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ABK69773.1	ABK69990.1	MSMEG_4045	MSMEG_4047	Muconolactone delta-isomerase; Identified by match to protein family HMM PF02426; Belongs to the muconolactone Delta-isomerase family.	Dihydropteroate synthase; Identified by match to protein family HMM PF00753.	0.780
ABK69773.1	ABK70401.1	MSMEG_4045	MSMEG_4049	Muconolactone delta-isomerase; Identified by match to protein family HMM PF02426; Belongs to the muconolactone Delta-isomerase family.	Sugar transporter, permease protein; Identified by match to protein family HMM PF00083; match to protein family HMM PF07690.	0.448
ABK69773.1	ABK71380.1	MSMEG_4045	MSMEG_4048	Muconolactone delta-isomerase; Identified by match to protein family HMM PF02426; Belongs to the muconolactone Delta-isomerase family.	Cyclase.	0.564
ABK69773.1	ABK74498.1	MSMEG_4045	MSMEG_4044	Muconolactone delta-isomerase; Identified by match to protein family HMM PF02426; Belongs to the muconolactone Delta-isomerase family.	GAF domain protein; Identified by match to protein family HMM PF01590.	0.634
ABK69773.1	ABK75750.1	MSMEG_4045	MSMEG_4046	Muconolactone delta-isomerase; Identified by match to protein family HMM PF02426; Belongs to the muconolactone Delta-isomerase family.	L-carnitine dehydratase/bile acid-inducible protein F; Identified by match to protein family HMM PF02515; Belongs to the CoA-transferase III family.	0.776
ABK69990.1	ABK69773.1	MSMEG_4047	MSMEG_4045	Dihydropteroate synthase; Identified by match to protein family HMM PF00753.	Muconolactone delta-isomerase; Identified by match to protein family HMM PF02426; Belongs to the muconolactone Delta-isomerase family.	0.780
ABK69990.1	ABK70401.1	MSMEG_4047	MSMEG_4049	Dihydropteroate synthase; Identified by match to protein family HMM PF00753.	Sugar transporter, permease protein; Identified by match to protein family HMM PF00083; match to protein family HMM PF07690.	0.448
ABK69990.1	ABK71380.1	MSMEG_4047	MSMEG_4048	Dihydropteroate synthase; Identified by match to protein family HMM PF00753.	Cyclase.	0.678
ABK69990.1	ABK73609.1	MSMEG_4047	MSMEG_3925	Dihydropteroate synthase; Identified by match to protein family HMM PF00753.	Identified by match to protein family HMM PF00753.	0.402
ABK69990.1	ABK74498.1	MSMEG_4047	MSMEG_4044	Dihydropteroate synthase; Identified by match to protein family HMM PF00753.	GAF domain protein; Identified by match to protein family HMM PF01590.	0.649
ABK69990.1	ABK75750.1	MSMEG_4047	MSMEG_4046	Dihydropteroate synthase; Identified by match to protein family HMM PF00753.	L-carnitine dehydratase/bile acid-inducible protein F; Identified by match to protein family HMM PF02515; Belongs to the CoA-transferase III family.	0.777
ABK69990.1	acpS	MSMEG_4047	MSMEG_4756	Dihydropteroate synthase; Identified by match to protein family HMM PF00753.	Holo-(acyl-carrier-protein) synthase; Transfers the 4'-phosphopantetheine moiety from coenzyme A to a Ser of acyl-carrier-protein; Belongs to the P-Pant transferase superfamily. AcpS family.	0.407
ABK69990.1	folK	MSMEG_4047	MSMEG_6101	Dihydropteroate synthase; Identified by match to protein family HMM PF00753.	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase; Identified by match to protein family HMM PF01288; match to protein family HMM TIGR01498.	0.840
ABK69990.1	folP	MSMEG_4047	MSMEG_5085	Dihydropteroate synthase; Identified by match to protein family HMM PF00753.	Dihydropteroate synthase; Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8- dihydropteroate (H2Pte), the immediate precursor of folate derivatives.	0.842
ABK69990.1	folP-2	MSMEG_4047	MSMEG_6103	Dihydropteroate synthase; Identified by match to protein family HMM PF00753.	Dihydropteroate synthase; Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8- dihydropteroate (H2Pte), the immediate precursor of folate derivatives.	0.842
ABK70401.1	ABK69773.1	MSMEG_4049	MSMEG_4045	Sugar transporter, permease protein; Identified by match to protein family HMM PF00083; match to protein family HMM PF07690.	Muconolactone delta-isomerase; Identified by match to protein family HMM PF02426; Belongs to the muconolactone Delta-isomerase family.	0.448
ABK70401.1	ABK69990.1	MSMEG_4049	MSMEG_4047	Sugar transporter, permease protein; Identified by match to protein family HMM PF00083; match to protein family HMM PF07690.	Dihydropteroate synthase; Identified by match to protein family HMM PF00753.	0.448
ABK70401.1	ABK71380.1	MSMEG_4049	MSMEG_4048	Sugar transporter, permease protein; Identified by match to protein family HMM PF00083; match to protein family HMM PF07690.	Cyclase.	0.639
ABK70401.1	ABK74498.1	MSMEG_4049	MSMEG_4044	Sugar transporter, permease protein; Identified by match to protein family HMM PF00083; match to protein family HMM PF07690.	GAF domain protein; Identified by match to protein family HMM PF01590.	0.417
ABK70401.1	ABK75750.1	MSMEG_4049	MSMEG_4046	Sugar transporter, permease protein; Identified by match to protein family HMM PF00083; match to protein family HMM PF07690.	L-carnitine dehydratase/bile acid-inducible protein F; Identified by match to protein family HMM PF02515; Belongs to the CoA-transferase III family.	0.460