STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABK71380.1Cyclase. (327 aa)    
Predicted Functional Partners:
ABK72215.1
Fumarate hydratase class I, anaerobic; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family.
    
  0.737
ABK69990.1
Dihydropteroate synthase; Identified by match to protein family HMM PF00753.
 
    0.678
ABK70401.1
Sugar transporter, permease protein; Identified by match to protein family HMM PF00083; match to protein family HMM PF07690.
       0.639
ABK75750.1
L-carnitine dehydratase/bile acid-inducible protein F; Identified by match to protein family HMM PF02515; Belongs to the CoA-transferase III family.
  
 
  0.609
ABK69773.1
Muconolactone delta-isomerase; Identified by match to protein family HMM PF02426; Belongs to the muconolactone Delta-isomerase family.
  
    0.564
ABK76090.1
Cupin domain protein; Identified by match to protein family HMM PF07883.
 
    0.519
ABK73258.1
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.503
ABK72604.1
Conserved hypothetical protein; Identified by match to protein family HMM PF05853.
  
  
 0.474
ABK74654.1
Conserved hypothetical protein; Identified by match to protein family HMM PF05853.
  
  
 0.474
ABK74498.1
GAF domain protein; Identified by match to protein family HMM PF01590.
       0.463
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.