Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
ABK70401.1Sugar transporter, permease protein; Identified by match to protein family HMM PF00083; match to protein family HMM PF07690. (482 aa)    
Predicted Functional Partners:
ABK74608.1
Putative transport protein; Identified by match to protein family HMM PF00083; match to protein family HMM PF07690.
  
  
 0.782
ABK71380.1
Cyclase.
       0.639
ABK75176.1
Nitrate reductase, alpha subunit; Identified by match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM TIGR01580; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
  
 
 0.615
ABK76174.1
Major facilitator superfamily protein MFS_1; Identified by match to protein family HMM PF07690.
 
  
 0.608
ABK73258.1
Hypothetical protein; Identified by Glimmer2; putative.
       0.596
ABK70248.1
Putative permease of the major facilitator superfamily protein; Identified by match to protein family HMM PF00083; match to protein family HMM PF07690.
 
  
 0.595
ABK72520.1
Major facilitator superfamily protein; Identified by match to protein family HMM PF07690.
 
 
 0.591
narH
Nitrate reductase, beta subunit; Identified by match to protein family HMM TIGR01660.
  
 
 0.573
narI
Respiratory nitrate reductase, gamma subunit; Identified by match to protein family HMM PF02665; match to protein family HMM TIGR00351.
  
 
 0.569
cobA
uroporphyrin-III C-methyltransferase; Identified by match to protein family HMM PF00590; match to protein family HMM TIGR01469; match to protein family HMM TIGR01470.
  
  
 0.529
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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