STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABK72471.1ABC transporter permease protein; Identified by match to protein family HMM PF00528. (350 aa)    
Predicted Functional Partners:
ABK73147.1
ABC-type transporter, substrate binding protein; Identified by match to protein family HMM PF00496.
 
 
 0.971
ABK72524.1
ABC transporter permease protein; Identified by match to protein family HMM PF00528.
  
 0.969
ABK74009.1
ABC transporter ATP-binding protein; Identified by match to protein family HMM PF00005; Belongs to the ABC transporter superfamily.
 
  
 0.957
ABK74639.1
Dipeptide transport ATP-binding protein DppD; Identified by match to protein family HMM PF00005; match to protein family HMM TIGR01727; Belongs to the ABC transporter superfamily.
 
 
 0.889
ABK75105.1
Oligopeptide transport ATP-binding protein OppD; Identified by match to protein family HMM PF00005; match to protein family HMM TIGR01727; Belongs to the ABC transporter superfamily.
 
 
 0.888
ABK73317.1
Peptide transport system ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM TIGR01727; Belongs to the ABC transporter superfamily.
 
 0.886
ABK69625.1
Oligopeptide transport ATP-binding protein AppF; Identified by match to protein family HMM PF00005; match to protein family HMM TIGR01727; Belongs to the ABC transporter superfamily.
 
 0.885
ABK71065.1
Peptide/nickel transport system substrate-binding protein; Identified by match to protein family HMM PF00496.
 
 0.880
ABK72569.1
Bacterial extracellular solute-binding protein, family protein 5; Identified by match to protein family HMM PF00496.
 
 
 0.880
ABK73656.1
ABC transporter oligopeptide binding protein; Identified by match to protein family HMM PF00496.
 
 0.876
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.