Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABK76238.1Cupin 2 protein; Identified by match to protein family HMM PF07883. (187 aa)    
Predicted Functional Partners:
ABK73975.1
Transcriptional regulator, GntR family protein; Identified by match to protein family HMM PF00392; match to protein family HMM PF07702.
 
  
 0.490
ABK71696.1
Conserved hypothetical protein; Identified by match to protein family HMM PF07045.
 
     0.469
ABK70320.1
phytanoyl-CoA dioxygenase; Identified by match to protein family HMM PF05721.
 
  
 0.436
ABK70028.1
Alkanesulfonate monooxygenase.
  
     0.425
ABK74367.1
Transcriptional regulator, GntR family protein; Identified by match to protein family HMM PF00392; match to protein family HMM PF02082; match to protein family HMM PF07702.
  
  
 0.424
ABK71748.1
GntR-family protein transcriptional regulator; Identified by match to protein family HMM PF00392; match to protein family HMM PF07702.
  
  
 0.424
phnF
GntR-family protein transcriptional regulator; Represses the phnDCE operon, involved in the uptake of phosphate, under conditions of phosphate availability in the cell.
  
  
 0.424
ABK72103.1
Putative transcriptional regulator; Identified by match to protein family HMM PF00392; match to protein family HMM PF07702.
  
  
 0.424
ABK74775.1
Transcriptional regulator, GntR family protein; Identified by match to protein family HMM PF00392; match to protein family HMM PF07702.
  
  
 0.424
ABK71510.1
GntR-family protein transcriptional regulator; Identified by match to protein family HMM PF00392; match to protein family HMM PF07702.
  
  
 0.424
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
Server load: low (34%) [HD]