Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABK69646.1D-ribose-binding periplasmic protein RbsB; Identified by match to protein family HMM PF00532. (372 aa)    
Predicted Functional Partners:
ABK75223.1
Ribose transport system permease protein RbsC; Identified by match to protein family HMM PF02653; Belongs to the binding-protein-dependent transport system permease family.
 
 0.981
ABK74263.1
Ribose transport ATP-binding protein RbsA; Identified by match to protein family HMM PF00005.
 
 0.976
ABK72360.1
Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components; Identified by match to protein family HMM PF02653; Belongs to the binding-protein-dependent transport system permease family.
 
 0.933
ABK71710.1
Inner membrane ABC transporter permease protein YjfF; Identified by match to protein family HMM PF02653; Belongs to the binding-protein-dependent transport system permease family.
 
 0.932
ABK70220.1
Ribose transport system permease protein RbsC; Identified by match to protein family HMM PF02653; Belongs to the binding-protein-dependent transport system permease family.
 
 0.931
ABK74237.1
Ribose transport system permease protein RbsC; Identified by match to protein family HMM PF02653; Belongs to the binding-protein-dependent transport system permease family.
 
 0.924
ABK75370.1
Ribose transport ATP-binding protein RbsA; Identified by match to protein family HMM PF00005.
 
 0.922
ABK75434.1
ATP binding protein of ABC transporter; Identified by match to protein family HMM PF00005.
 
 0.920
ABK75313.1
Ribose transport system permease protein RbsC; Identified by match to protein family HMM PF02653; Belongs to the binding-protein-dependent transport system permease family.
 
 0.915
ABK75364.1
Ribose transport ATP-binding protein RbsA; Identified by match to protein family HMM PF00005.
 
 0.908
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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