Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
ABK72710.1Transcriptional regulator, IclR family protein; Identified by match to protein family HMM PF01614. (265 aa)    
Predicted Functional Partners:
ABK73370.1
Identified by match to protein family HMM PF01575.
  
 
 0.896
ABK76161.1
Hypothetical protein; Identified by Glimmer2; putative.
      
 0.812
ABK69646.1
D-ribose-binding periplasmic protein RbsB; Identified by match to protein family HMM PF00532.
       0.775
ABK71987.1
Probable IclR family protein regulator; Identified by match to protein family HMM PF01614.
  
     0.774
ABK70380.1
acyl-CoA dehydrogenase; Identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF08028.
    
  0.772
ABK73501.1
3-oxoacyl-[acyl-carrier-protein] reductase; Identified by match to protein family HMM PF00106; match to protein family HMM PF01370.
       0.756
ABK75223.1
Ribose transport system permease protein RbsC; Identified by match to protein family HMM PF02653; Belongs to the binding-protein-dependent transport system permease family.
       0.755
ABK71570.1
Alcohol dehydrogenase B; Identified by match to protein family HMM PF00107.
       0.752
ABK72308.1
Propionate CoA-transferase; Identified by match to protein family HMM PF01144; Belongs to the 3-oxoacid CoA-transferase family.
       0.752
ABK74263.1
Ribose transport ATP-binding protein RbsA; Identified by match to protein family HMM PF00005.
       0.752
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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