Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ABK73937.1Putative transcriptional regulator; Identified by match to protein family HMM PF00196; match to protein family HMM PF07721. (873 aa)    
Predicted Functional Partners:
ABK72968.1
Catalase.
 
     0.741
ABK74950.1
Conserved hypothetical protein.
 
     0.675
ABK70238.1
Lipoprotein, putative.
  
 
   0.647
ABK70583.1
Conserved hypothetical protein.
  
     0.596
ABK73759.1
LysM domain protein; Identified by match to protein family HMM PF01476.
  
     0.589
ABK75336.1
Conserved hypothetical protein; Belongs to the alpha-IPM synthase/homocitrate synthase family.
 
     0.584
ABK70111.1
Conserved hypothetical protein.
 
     0.584
ABK70441.1
LprB protein.
  
 
   0.581
ABK71593.1
LprB protein.
  
 
   0.559
ABK73443.1
Conserved hypothetical protein.
  
     0.556
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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