Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABK72071.1Identified by match to protein family HMM PF03401. (327 aa)    
Predicted Functional Partners:
ABK70628.1
Integral membrane protein.
 
  
 0.987
ABK76022.1
Integral membrane protein; Identified by match to protein family HMM PF01970.
 
  
 0.982
ABK70240.1
Integral membrane protein; Identified by match to protein family HMM PF01970.
 
  
 0.922
ABK69643.1
Putative periplasmic solute-binding protein; Identified by match to protein family HMM PF03401.
  
  
 
0.885
ABK71794.1
Transcriptional regulatory protein CitT; Identified by match to protein family HMM PF00072.
 
    0.879
ABK70315.1
Two component system histidine kinase; Identified by match to protein family HMM PF02518.
 
    0.874
ABK72172.1
Identified by match to protein family HMM PF00582.
 
    0.856
ABK72675.1
Two-component sensor kinase; Identified by match to protein family HMM PF02518.
 
    0.510
ABK71689.1
Two-component system response regulator; Identified by match to protein family HMM PF00072.
 
    0.492
ABK72567.1
Cytochrome P450 hydroxylase; Identified by match to protein family HMM PF00067; Belongs to the cytochrome P450 family.
  
  
 0.484
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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