Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABK72474.1Conserved hypothetical protein. (135 aa)    
Predicted Functional Partners:
ABK73345.1
Putative membrane transport ATPase; Identified by match to protein family HMM PF02374.
 
    0.920
ABK76083.1
Cyclase/dehydrase; Identified by match to protein family HMM PF03364.
       0.817
ABK75765.1
Putative conserved membrane alanine rich protein.
  
     0.764
ABK72680.1
Conserved hypothetical protein.
  
     0.748
ABK72749.1
Conserved hypothetical protein.
  
    0.744
ABK70706.1
Probable exported protein.
  
    0.742
ABK72090.1
Conserved hypothetical protein.
  
     0.739
ABK70363.1
Conserved hypothetical protein.
 
     0.737
ABK70482.1
LprC protein.
  
     0.704
ABK72868.1
Conserved hypothetical protein.
  
     0.693
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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