Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABK71812.1Conserved hypothetical protein. (237 aa)    
Predicted Functional Partners:
ABK70006.1
RNA polymerase sigma factor, sigma-70 family protein; Identified by match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM TIGR02937; Belongs to the sigma-70 factor family. ECF subfamily.
 
     0.870
ABK70615.1
methylated-DNA--protein-cysteine methyltransferase; Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction: the enzyme is irreversibly inactivated.
 
    0.845
ABK75428.1
Hypothetical protein; Identified by Glimmer2; putative.
       0.532
ABK73643.1
Hypothetical protein; Identified by Glimmer2; putative.
       0.471
ABK70918.1
Transcriptional regulator, Ada family protein/DNA-3-methyladenine glycosylase II; Identified by match to protein family HMM PF00165; match to protein family HMM PF00730; match to protein family HMM PF02805; match to protein family HMM PF06029.
 
     0.456
ABK75249.1
Glyoxalase/bleomycin resistance protein/dioxygenase; Identified by match to protein family HMM PF00903.
       0.413
ABK70092.1
Ferric enterobactin transport system permease protein FepD; Identified by match to protein family HMM PF01032; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
   
    0.406
ABK74043.1
ABC transporter, membrane spanning protein; Identified by match to protein family HMM PF00950; match to protein family HMM PF01032; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
   
    0.406
ABK74012.1
Fe uptake system integral membrane protein; Identified by match to protein family HMM PF01032; match to protein family HMM PF02653; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
   
    0.406
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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