Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
ABK71371.1Conserved hypothetical protein. (181 aa)    
Predicted Functional Partners:
ABK74482.1
PTS system, glucose-specific IIBC component; Identified by match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00826.
     
 0.815
otsB
Trehalose-phosphatase; Removes the phosphate from trehalose 6-phosphate to produce free trehalose.
  
 
 0.815
ABK75410.1
Putative secreted protein.
       0.777
ABK71774.1
Polyketide synthase; Identified by match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF00698; match to protein family HMM PF00975; match to protein family HMM PF02801.
     
 0.770
ABK75326.1
D-beta-hydroxybutyrate dehydrogenase; Identified by match to protein family HMM PF00106; match to protein family HMM PF01370.
  
  
 0.557
ABK74548.1
Dipeptide-binding protein of ABC transport system; Identified by match to protein family HMM PF00496.
       0.555
ABK72814.1
Peptide ABC transporter, permease protein; Identified by match to protein family HMM PF00528.
       0.555
ABK69993.1
Inner membrane ABC transporter permease protein YddQ; Identified by match to protein family HMM PF00528.
       0.555
ABK76043.1
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; Belongs to the ABC transporter superfamily.
     
 0.540
ABK71158.1
Conserved hypothetical protein.
      
 0.532
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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