Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABK69993.1Inner membrane ABC transporter permease protein YddQ; Identified by match to protein family HMM PF00528. (292 aa)    
Predicted Functional Partners:
ABK76043.1
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; Belongs to the ABC transporter superfamily.
 0.999
ABK74548.1
Dipeptide-binding protein of ABC transport system; Identified by match to protein family HMM PF00496.
 
 0.998
ABK72814.1
Peptide ABC transporter, permease protein; Identified by match to protein family HMM PF00528.
 0.998
ABK72178.1
Bacterial extracellular solute-binding protein, family protein 5; Identified by match to protein family HMM PF00496.
  
 0.978
ABK72058.1
Dipeptide transport system permease protein DppB; Identified by match to protein family HMM PF00528.
 0.973
ABK75105.1
Oligopeptide transport ATP-binding protein OppD; Identified by match to protein family HMM PF00005; match to protein family HMM TIGR01727; Belongs to the ABC transporter superfamily.
 0.972
ABK74639.1
Dipeptide transport ATP-binding protein DppD; Identified by match to protein family HMM PF00005; match to protein family HMM TIGR01727; Belongs to the ABC transporter superfamily.
 0.967
ABK70874.1
Oligopeptide transport system permease protein AppB; Identified by match to protein family HMM PF00528.
 
 0.966
ABK74224.1
ABC transporter permease protein; Identified by match to protein family HMM PF00528.
 
 0.964
oppD
ABC transporter, ATP-binding protein OppD; Identified by match to protein family HMM PF00005; match to protein family HMM TIGR01727; Belongs to the ABC transporter superfamily.
 0.954
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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