STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABK75326.1D-beta-hydroxybutyrate dehydrogenase; Identified by match to protein family HMM PF00106; match to protein family HMM PF01370. (246 aa)    
Predicted Functional Partners:
ABK70103.1
Fatty acid synthase; Identified by match to protein family HMM PF00109; match to protein family HMM PF00698; match to protein family HMM PF01575; match to protein family HMM PF02801.
  
 0.909
ABK76043.1
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; Belongs to the ABC transporter superfamily.
  
    0.789
ABK72814.1
Peptide ABC transporter, permease protein; Identified by match to protein family HMM PF00528.
  
    0.787
ABK69993.1
Inner membrane ABC transporter permease protein YddQ; Identified by match to protein family HMM PF00528.
       0.782
ABK74548.1
Dipeptide-binding protein of ABC transport system; Identified by match to protein family HMM PF00496.
     
 0.779
ABK74776.1
3-alpha-hydroxysteroid dehydrogenase.
  
     0.758
ABK69607.1
Oxidoreductase; Identified by match to protein family HMM PF00106; match to protein family HMM PF01370.
  
     0.737
ABK72992.1
Short-chain dehydrogenase/reductase SDR; Identified by match to protein family HMM PF00106; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
 
 0.701
ABK72398.1
Amino acid adenylation; Identified by match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM PF00975; match to protein family HMM TIGR01720; match to protein family HMM TIGR01733.
  
 0.698
ABK75305.1
Short chain dehydrogenase; Identified by match to protein family HMM PF00106.
  
     0.666
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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