Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABK72585.1Conserved hypothetical protein. (80 aa)    
Predicted Functional Partners:
ABK72294.1
Hypothetical protein; Identified by Glimmer2; putative.
       0.572
ABK71731.1
Identified by match to protein family HMM PF00582.
 
  
 0.505
ABK73325.1
Probable conserved transmembrane protein.
  
  
 0.497
ABK72096.1
Identified by match to protein family HMM PF00582.
 
  
 0.476
ABK70721.1
Conserved hypothetical protein.
 
    0.459
ABK74663.1
Probable conserved transmembrane protein.
  
  
 0.441
ABK73366.1
Conserved hypothetical protein.
 
    0.435
ABK73042.1
Probable conserved transmembrane protein.
  
  
 0.417
ABK75611.1
Probable conserved transmembrane protein.
  
  
 0.415
ABK70463.1
Conserved hypothetical protein.
 
  
 0.411
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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