ABK72935.1 protein (Mycolicibacterium smegmatis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

ABK72935.1

Vanillate O-demethylase oxidoreductase; Identified by match to protein family HMM PF00111; match to protein family HMM PF00175; match to protein family HMM PF00970. (315 aa)

Predicted Functional Partners:

ABK72679.1

0.914

ABK73860.1

0.899

ABK69864.1

0.885

ABK73847.1

0.876

ABK72561.1

0.829

ABK74281.1

0.829

ABK76062.1

0.827

ABK73018.1

0.807

ABK73927.1

0.801

speB-3

0.800

Your Current Organism:

Mycolicibacterium smegmatis

NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ABK69864.1	ABK72679.1	MSMEG_5681	MSMEG_1906	Probable ferredoxin/ferredoxin--NADP reductase; Identified by match to protein family HMM PF00037; match to protein family HMM PF07992.	Toluate 1,2-dioxygenase electron transfer component; Identified by match to protein family HMM PF00106; match to protein family HMM PF00111; match to protein family HMM PF00175; match to protein family HMM PF00970; match to protein family HMM PF07729; match to protein family HMM PF08021.	0.992
ABK69864.1	ABK72935.1	MSMEG_5681	MSMEG_4371	Probable ferredoxin/ferredoxin--NADP reductase; Identified by match to protein family HMM PF00037; match to protein family HMM PF07992.	Vanillate O-demethylase oxidoreductase; Identified by match to protein family HMM PF00111; match to protein family HMM PF00175; match to protein family HMM PF00970.	0.885
ABK69864.1	ABK73847.1	MSMEG_5681	MSMEG_5124	Probable ferredoxin/ferredoxin--NADP reductase; Identified by match to protein family HMM PF00037; match to protein family HMM PF07992.	2,4-dienoyl-coA reductase; Identified by match to protein family HMM PF00070; match to protein family HMM PF00724; match to protein family HMM PF03486; match to protein family HMM PF07992.	0.747
ABK69864.1	ABK73927.1	MSMEG_5681	MSMEG_4870	Probable ferredoxin/ferredoxin--NADP reductase; Identified by match to protein family HMM PF00037; match to protein family HMM PF07992.	FAD binding domain, putative; Identified by match to protein family HMM PF00890; match to protein family HMM PF01266.	0.527
ABK69864.1	ABK76062.1	MSMEG_5681	MSMEG_4009	Probable ferredoxin/ferredoxin--NADP reductase; Identified by match to protein family HMM PF00037; match to protein family HMM PF07992.	Vanillate O-demethylase oxidoreductase; Identified by match to protein family HMM PF00111.	0.897
ABK72561.1	ABK72679.1	MSMEG_4375	MSMEG_1906	3-oxoacyl-[acyl carrier protein] reductase; Identified by match to protein family HMM PF00106.	Toluate 1,2-dioxygenase electron transfer component; Identified by match to protein family HMM PF00106; match to protein family HMM PF00111; match to protein family HMM PF00175; match to protein family HMM PF00970; match to protein family HMM PF07729; match to protein family HMM PF08021.	0.458
ABK72561.1	ABK72935.1	MSMEG_4375	MSMEG_4371	3-oxoacyl-[acyl carrier protein] reductase; Identified by match to protein family HMM PF00106.	Vanillate O-demethylase oxidoreductase; Identified by match to protein family HMM PF00111; match to protein family HMM PF00175; match to protein family HMM PF00970.	0.829
ABK72561.1	ABK73860.1	MSMEG_4375	MSMEG_4372	3-oxoacyl-[acyl carrier protein] reductase; Identified by match to protein family HMM PF00106.	Capreomycidine hydroxylase; Identified by match to protein family HMM PF00355.	0.777
ABK72561.1	ABK74281.1	MSMEG_4375	MSMEG_4376	3-oxoacyl-[acyl carrier protein] reductase; Identified by match to protein family HMM PF00106.	3-oxoacyl-[acyl-carrier-protein] reductase; Identified by match to protein family HMM PF00106; match to protein family HMM PF01370.	0.943
ABK72561.1	ABK76062.1	MSMEG_4375	MSMEG_4009	3-oxoacyl-[acyl carrier protein] reductase; Identified by match to protein family HMM PF00106.	Vanillate O-demethylase oxidoreductase; Identified by match to protein family HMM PF00111.	0.476
ABK72561.1	speB-3	MSMEG_4375	MSMEG_4374	3-oxoacyl-[acyl carrier protein] reductase; Identified by match to protein family HMM PF00106.	Agmatinase; Identified by match to protein family HMM PF00491; match to protein family HMM TIGR01230; Belongs to the arginase family.	0.775
ABK72679.1	ABK69864.1	MSMEG_1906	MSMEG_5681	Toluate 1,2-dioxygenase electron transfer component; Identified by match to protein family HMM PF00106; match to protein family HMM PF00111; match to protein family HMM PF00175; match to protein family HMM PF00970; match to protein family HMM PF07729; match to protein family HMM PF08021.	Probable ferredoxin/ferredoxin--NADP reductase; Identified by match to protein family HMM PF00037; match to protein family HMM PF07992.	0.992
ABK72679.1	ABK72561.1	MSMEG_1906	MSMEG_4375	Toluate 1,2-dioxygenase electron transfer component; Identified by match to protein family HMM PF00106; match to protein family HMM PF00111; match to protein family HMM PF00175; match to protein family HMM PF00970; match to protein family HMM PF07729; match to protein family HMM PF08021.	3-oxoacyl-[acyl carrier protein] reductase; Identified by match to protein family HMM PF00106.	0.458
ABK72679.1	ABK72935.1	MSMEG_1906	MSMEG_4371	Toluate 1,2-dioxygenase electron transfer component; Identified by match to protein family HMM PF00106; match to protein family HMM PF00111; match to protein family HMM PF00175; match to protein family HMM PF00970; match to protein family HMM PF07729; match to protein family HMM PF08021.	Vanillate O-demethylase oxidoreductase; Identified by match to protein family HMM PF00111; match to protein family HMM PF00175; match to protein family HMM PF00970.	0.914
ABK72679.1	ABK73018.1	MSMEG_1906	MSMEG_3126	Toluate 1,2-dioxygenase electron transfer component; Identified by match to protein family HMM PF00106; match to protein family HMM PF00111; match to protein family HMM PF00175; match to protein family HMM PF00970; match to protein family HMM PF07729; match to protein family HMM PF08021.	SUF system FeS assembly protein, NifU family protein; Identified by match to protein family HMM PF01592; match to protein family HMM TIGR01994.	0.830
ABK72679.1	ABK73847.1	MSMEG_1906	MSMEG_5124	Toluate 1,2-dioxygenase electron transfer component; Identified by match to protein family HMM PF00106; match to protein family HMM PF00111; match to protein family HMM PF00175; match to protein family HMM PF00970; match to protein family HMM PF07729; match to protein family HMM PF08021.	2,4-dienoyl-coA reductase; Identified by match to protein family HMM PF00070; match to protein family HMM PF00724; match to protein family HMM PF03486; match to protein family HMM PF07992.	0.981
ABK72679.1	ABK73860.1	MSMEG_1906	MSMEG_4372	Toluate 1,2-dioxygenase electron transfer component; Identified by match to protein family HMM PF00106; match to protein family HMM PF00111; match to protein family HMM PF00175; match to protein family HMM PF00970; match to protein family HMM PF07729; match to protein family HMM PF08021.	Capreomycidine hydroxylase; Identified by match to protein family HMM PF00355.	0.837
ABK72679.1	ABK73927.1	MSMEG_1906	MSMEG_4870	Toluate 1,2-dioxygenase electron transfer component; Identified by match to protein family HMM PF00106; match to protein family HMM PF00111; match to protein family HMM PF00175; match to protein family HMM PF00970; match to protein family HMM PF07729; match to protein family HMM PF08021.	FAD binding domain, putative; Identified by match to protein family HMM PF00890; match to protein family HMM PF01266.	0.884
ABK72679.1	ABK74281.1	MSMEG_1906	MSMEG_4376	Toluate 1,2-dioxygenase electron transfer component; Identified by match to protein family HMM PF00106; match to protein family HMM PF00111; match to protein family HMM PF00175; match to protein family HMM PF00970; match to protein family HMM PF07729; match to protein family HMM PF08021.	3-oxoacyl-[acyl-carrier-protein] reductase; Identified by match to protein family HMM PF00106; match to protein family HMM PF01370.	0.458
ABK72679.1	ABK76062.1	MSMEG_1906	MSMEG_4009	Toluate 1,2-dioxygenase electron transfer component; Identified by match to protein family HMM PF00106; match to protein family HMM PF00111; match to protein family HMM PF00175; match to protein family HMM PF00970; match to protein family HMM PF07729; match to protein family HMM PF08021.	Vanillate O-demethylase oxidoreductase; Identified by match to protein family HMM PF00111.	0.992

page 1 of 4

Server load: low (34%) [HD]

Permalink

Network

Neighborhood

Experiments

Co-occurrence

Databases

Co-expression

Textmining

Fusion

© STRING Consortium 2026

Credits

Access

Info

About