Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABK73294.1Two-component system response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00196. (214 aa)    
Predicted Functional Partners:
ABK75795.1
Two-component system sensor kinase; Identified by match to protein family HMM PF00989; match to protein family HMM PF01590; match to protein family HMM PF02518; match to protein family HMM PF07730; match to protein family HMM TIGR00229.
 
 0.943
ABK69819.1
Two-component system sensor kinase; Identified by match to protein family HMM PF02518; match to protein family HMM PF07730.
 
 0.918
ABK73884.1
Sensor histidine kinase; Identified by match to protein family HMM PF01590; match to protein family HMM PF02518; match to protein family HMM PF07730.
 
 0.912
ABK73924.1
GAF family protein; Identified by match to protein family HMM PF01590; match to protein family HMM PF02518; match to protein family HMM PF07730.
 
 0.905
ABK71143.1
Two-component system sensor kinase; Identified by match to protein family HMM PF02518; match to protein family HMM PF07730; match to protein family HMM TIGR00229.
 
 0.899
ABK74001.1
Sensory histidine kinase; Identified by match to protein family HMM PF02518.
 
 0.890
ABK73729.1
Signal transduction histidine kinase; Identified by match to protein family HMM PF01590; match to protein family HMM PF02518; match to protein family HMM PF07730.
 
 0.887
ABK71043.1
Two-component system sensor kinase; Identified by match to protein family HMM PF02518; match to protein family HMM PF07730.
 
 0.887
ABK73590.1
Two-component system sensor kinase; Identified by match to protein family HMM PF02518; match to protein family HMM PF07730.
 
 0.884
ABK71972.1
Two-component system sensor kinase; Identified by match to protein family HMM PF00672; match to protein family HMM PF02518; match to protein family HMM PF07730.
 
 0.882
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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