ABK73572.1 protein (Mycolicibacterium smegmatis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

ABK73572.1

ABC transporter, permease/ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF06472. (641 aa)

Predicted Functional Partners:

ABK71432.1

0.824

ABK74043.1

0.824

ABK73083.1

0.811

cobT

0.768

ABK69551.1

0.734

ABK73210.1

0.641

saeC

0.611

ABK75076.1

0.596

ABK70992.1

0.586

alc

0.557

Your Current Organism:

Mycolicibacterium smegmatis

NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ABK69551.1	ABK73210.1	MSMEG_3656	MSMEG_0858	ABC transporter, permease/ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF06472.	Cell division control protein Cdc48; Identified by match to protein family HMM PF00004; match to protein family HMM PF02359; Belongs to the AAA ATPase family.	0.647
ABK69551.1	ABK73572.1	MSMEG_3656	MSMEG_4380	ABC transporter, permease/ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF06472.	ABC transporter, permease/ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF06472.	0.734
ABK69551.1	alc	MSMEG_3656	MSMEG_5727	ABC transporter, permease/ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF06472.	Allantoicase; Identified by match to protein family HMM PF03561; match to protein family HMM TIGR02961; Belongs to the allantoicase family.	0.557
ABK69551.1	saeC	MSMEG_3656	MSMEG_0046	ABC transporter, permease/ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF06472.	Conserved hypothetical protein; May be involved in assembly of the ESX-1 / type VII specialized secretion system (T7SS), which exports several proteins including EsxA and EsxB. Involved in DNA conjugation in recipient (MKD8) strain.	0.611
ABK70992.1	ABK73572.1	MSMEG_4382	MSMEG_4380	Identified by match to protein family HMM PF00106; match to protein family HMM PF01370.	ABC transporter, permease/ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF06472.	0.586
ABK70992.1	ABK75076.1	MSMEG_4382	MSMEG_4381	Identified by match to protein family HMM PF00106; match to protein family HMM PF01370.	Amidase; Identified by match to protein family HMM PF03069.	0.848
ABK71432.1	ABK73083.1	MSMEG_4558	MSMEG_4560	Conserved hypothetical protein.	Periplasmic binding protein; Identified by match to protein family HMM PF01497.	0.819
ABK71432.1	ABK73572.1	MSMEG_4558	MSMEG_4380	Conserved hypothetical protein.	ABC transporter, permease/ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF06472.	0.824
ABK71432.1	ABK74043.1	MSMEG_4558	MSMEG_4559	Conserved hypothetical protein.	ABC transporter, membrane spanning protein; Identified by match to protein family HMM PF00950; match to protein family HMM PF01032; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.	0.824
ABK71432.1	cobT	MSMEG_4558	MSMEG_4275	Conserved hypothetical protein.	Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase; Catalyzes the synthesis of alpha-ribazole-5'-phosphate from nicotinate mononucleotide (NAMN) and 5,6-dimethylbenzimidazole (DMB).	0.764
ABK73083.1	ABK71432.1	MSMEG_4560	MSMEG_4558	Periplasmic binding protein; Identified by match to protein family HMM PF01497.	Conserved hypothetical protein.	0.819
ABK73083.1	ABK73572.1	MSMEG_4560	MSMEG_4380	Periplasmic binding protein; Identified by match to protein family HMM PF01497.	ABC transporter, permease/ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF06472.	0.811
ABK73083.1	ABK74043.1	MSMEG_4560	MSMEG_4559	Periplasmic binding protein; Identified by match to protein family HMM PF01497.	ABC transporter, membrane spanning protein; Identified by match to protein family HMM PF00950; match to protein family HMM PF01032; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.	0.995
ABK73083.1	cobT	MSMEG_4560	MSMEG_4275	Periplasmic binding protein; Identified by match to protein family HMM PF01497.	Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase; Catalyzes the synthesis of alpha-ribazole-5'-phosphate from nicotinate mononucleotide (NAMN) and 5,6-dimethylbenzimidazole (DMB).	0.501
ABK73210.1	ABK69551.1	MSMEG_0858	MSMEG_3656	Cell division control protein Cdc48; Identified by match to protein family HMM PF00004; match to protein family HMM PF02359; Belongs to the AAA ATPase family.	ABC transporter, permease/ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF06472.	0.647
ABK73210.1	ABK73572.1	MSMEG_0858	MSMEG_4380	Cell division control protein Cdc48; Identified by match to protein family HMM PF00004; match to protein family HMM PF02359; Belongs to the AAA ATPase family.	ABC transporter, permease/ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF06472.	0.641
ABK73210.1	alc	MSMEG_0858	MSMEG_5727	Cell division control protein Cdc48; Identified by match to protein family HMM PF00004; match to protein family HMM PF02359; Belongs to the AAA ATPase family.	Allantoicase; Identified by match to protein family HMM PF03561; match to protein family HMM TIGR02961; Belongs to the allantoicase family.	0.525
ABK73210.1	saeC	MSMEG_0858	MSMEG_0046	Cell division control protein Cdc48; Identified by match to protein family HMM PF00004; match to protein family HMM PF02359; Belongs to the AAA ATPase family.	Conserved hypothetical protein; May be involved in assembly of the ESX-1 / type VII specialized secretion system (T7SS), which exports several proteins including EsxA and EsxB. Involved in DNA conjugation in recipient (MKD8) strain.	0.627
ABK73572.1	ABK69551.1	MSMEG_4380	MSMEG_3656	ABC transporter, permease/ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF06472.	ABC transporter, permease/ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF06472.	0.734
ABK73572.1	ABK70992.1	MSMEG_4380	MSMEG_4382	ABC transporter, permease/ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF06472.	Identified by match to protein family HMM PF00106; match to protein family HMM PF01370.	0.586

page 1 of 3

Server load: low (30%) [HD]

Permalink

Network

Neighborhood

Experiments

Co-occurrence

Databases

Co-expression

Textmining

Fusion

© STRING Consortium 2026

Credits

Access

Info

About