ABK71810.1 protein (Mycolicibacterium smegmatis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

ABK71810.1

Organophopsphate acid anhydrase; Identified by match to protein family HMM PF01979. (425 aa)

Predicted Functional Partners:

hutU

0.847

ABK71197.1

0.825

ABK74131.1

0.752

ABK71246.1

0.664

hutH

0.653

ABK70811.1

0.572

sppA

0.539

ABK71649.1

0.514

speB

0.509

speB-2

0.509

Your Current Organism:

Mycolicibacterium smegmatis

NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ABK70811.1	ABK71810.1	MSMEG_4390	MSMEG_4392	Hypothetical protein; Identified by Glimmer2; putative.	Organophopsphate acid anhydrase; Identified by match to protein family HMM PF01979.	0.572
ABK70811.1	ABK74131.1	MSMEG_4390	MSMEG_4393	Hypothetical protein; Identified by Glimmer2; putative.	Carboxyvinyl-carboxyphosphonate phosphorylmutase.	0.557
ABK71197.1	ABK71810.1	MSMEG_3596	MSMEG_4392	ATPase.	Organophopsphate acid anhydrase; Identified by match to protein family HMM PF01979.	0.825
ABK71197.1	sppA	MSMEG_3596	MSMEG_1476	ATPase.	Signal peptide peptidase SppA, 67K type; Identified by match to protein family HMM PF01343; match to protein family HMM TIGR00705; match to protein family HMM TIGR00706.	0.824
ABK71246.1	ABK71810.1	MSMEG_2431	MSMEG_4392	Amidohydrolase 3; Identified by match to protein family HMM PF01979.	Organophopsphate acid anhydrase; Identified by match to protein family HMM PF01979.	0.664
ABK71246.1	hutH	MSMEG_2431	MSMEG_1183	Amidohydrolase 3; Identified by match to protein family HMM PF01979.	Histidine ammonia-lyase; Identified by similarity to EGAD:14121; match to protein family HMM PF00221; match to protein family HMM TIGR01225.	0.653
ABK71246.1	hutU	MSMEG_2431	MSMEG_1179	Amidohydrolase 3; Identified by match to protein family HMM PF01979.	Urocanate hydratase; Catalyzes the conversion of urocanate to 4-imidazolone-5- propionate.	0.707
ABK71246.1	speB	MSMEG_2431	MSMEG_1072	Amidohydrolase 3; Identified by match to protein family HMM PF01979.	Agmatinase; Identified by match to protein family HMM PF00491; match to protein family HMM TIGR01230; Belongs to the arginase family.	0.509
ABK71246.1	speB-2	MSMEG_2431	MSMEG_3535	Amidohydrolase 3; Identified by match to protein family HMM PF01979.	Agmatinase; Identified by match to protein family HMM PF00491; match to protein family HMM TIGR01230; Belongs to the arginase family.	0.509
ABK71649.1	ABK71810.1	MSMEG_2092	MSMEG_4392	D-aminopeptidase; Identified by match to protein family HMM PF03576.	Organophopsphate acid anhydrase; Identified by match to protein family HMM PF01979.	0.514
ABK71810.1	ABK70811.1	MSMEG_4392	MSMEG_4390	Organophopsphate acid anhydrase; Identified by match to protein family HMM PF01979.	Hypothetical protein; Identified by Glimmer2; putative.	0.572
ABK71810.1	ABK71197.1	MSMEG_4392	MSMEG_3596	Organophopsphate acid anhydrase; Identified by match to protein family HMM PF01979.	ATPase.	0.825
ABK71810.1	ABK71246.1	MSMEG_4392	MSMEG_2431	Organophopsphate acid anhydrase; Identified by match to protein family HMM PF01979.	Amidohydrolase 3; Identified by match to protein family HMM PF01979.	0.664
ABK71810.1	ABK71649.1	MSMEG_4392	MSMEG_2092	Organophopsphate acid anhydrase; Identified by match to protein family HMM PF01979.	D-aminopeptidase; Identified by match to protein family HMM PF03576.	0.514
ABK71810.1	ABK74131.1	MSMEG_4392	MSMEG_4393	Organophopsphate acid anhydrase; Identified by match to protein family HMM PF01979.	Carboxyvinyl-carboxyphosphonate phosphorylmutase.	0.752
ABK71810.1	hutH	MSMEG_4392	MSMEG_1183	Organophopsphate acid anhydrase; Identified by match to protein family HMM PF01979.	Histidine ammonia-lyase; Identified by similarity to EGAD:14121; match to protein family HMM PF00221; match to protein family HMM TIGR01225.	0.653
ABK71810.1	hutU	MSMEG_4392	MSMEG_1179	Organophopsphate acid anhydrase; Identified by match to protein family HMM PF01979.	Urocanate hydratase; Catalyzes the conversion of urocanate to 4-imidazolone-5- propionate.	0.847
ABK71810.1	speB	MSMEG_4392	MSMEG_1072	Organophopsphate acid anhydrase; Identified by match to protein family HMM PF01979.	Agmatinase; Identified by match to protein family HMM PF00491; match to protein family HMM TIGR01230; Belongs to the arginase family.	0.509
ABK71810.1	speB-2	MSMEG_4392	MSMEG_3535	Organophopsphate acid anhydrase; Identified by match to protein family HMM PF01979.	Agmatinase; Identified by match to protein family HMM PF00491; match to protein family HMM TIGR01230; Belongs to the arginase family.	0.509
ABK71810.1	sppA	MSMEG_4392	MSMEG_1476	Organophopsphate acid anhydrase; Identified by match to protein family HMM PF01979.	Signal peptide peptidase SppA, 67K type; Identified by match to protein family HMM PF01343; match to protein family HMM TIGR00705; match to protein family HMM TIGR00706.	0.539