STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABK76042.1Isochorismatase hydrolase; Identified by match to protein family HMM PF00857. (247 aa)    
Predicted Functional Partners:
ABK73995.1
H-N-H endonuclease F-TflIV.
  
   
 0.796
thiC
Thiamine biosynthesis protein ThiC; Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction. Belongs to the ThiC family.
  
  
 0.780
ABK75396.1
HNH endonuclease; Identified by match to protein family HMM PF01844; match to protein family HMM PF02720.
   
  
 0.736
ABK74432.1
HNH endonuclease; Identified by match to protein family HMM PF01844; match to protein family HMM PF02720.
      
 0.733
ABK74532.1
HNH nuclease, putative.
      
 0.733
ABK73158.1
HNH endonuclease; Identified by match to protein family HMM PF01844; match to protein family HMM PF02720.
      
 0.733
ABK71630.1
Conserved hypothetical protein.
      
 0.733
saeA
Hypothetical protein; May be involved in assembly of the ESX-1 / type VII specialized secretion system (T7SS), which exports several proteins including EsxA and EsxB. Involved in DNA conjugation in recipient (MKD8) but not donor (mc(2)155) strain.
  
    0.647
ABK75522.1
Conserved hypothetical protein; Identified by match to protein family HMM PF05976.
 
  
 0.632
ABK69959.1
Cutinase superfamily protein; Identified by match to protein family HMM PF01083.
 
    0.623
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.