Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABK74796.1Cupin 2, conserved barrel; Identified by match to protein family HMM PF07883. (144 aa)    
Predicted Functional Partners:
ABK71606.1
Conserved hypothetical protein.
 
    0.849
ABK76134.1
Oxidoreductase.
  
  
 0.808
ABK73816.1
Oxidoreductase; Identified by match to protein family HMM PF00070; match to protein family HMM PF01134; match to protein family HMM PF01266; match to protein family HMM PF02852; match to protein family HMM PF07992.
  
    0.767
ABK74670.1
Endoribonuclease L-PSP; Identified by match to protein family HMM PF01042.
 
  
 0.683
ABK73474.1
Identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF04321; match to protein family HMM PF05368.
 
     0.672
ABK74213.1
Transmembrane efflux pump; Identified by match to protein family HMM PF07690.
 
   
 0.662
ABK69865.1
Metal-dependent phosphohydrolase; Identified by match to protein family HMM PF01966; match to protein family HMM TIGR00277.
 
     0.660
ABK75286.1
Glucose-1-dehydrogenase; Identified by match to protein family HMM PF00106.
 
 
 0.631
ABK69742.1
Conserved secreted protein.
 
     0.615
ABK71546.1
Integral membrane protein; Identified by match to protein family HMM PF04224.
 
     0.609
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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