Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
ABK74658.1Conserved hypothetical protein. (145 aa)    
Predicted Functional Partners:
ABK73474.1
Identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF04321; match to protein family HMM PF05368.
 
     0.723
ABK71604.1
Transcriptional regulator; Identified by match to protein family HMM PF00196; match to protein family HMM PF07719; match to protein family HMM PF07721.
 
    0.597
ABK74292.1
Oxidoreductase, zinc-binding dehydrogenase family protein; Identified by match to protein family HMM PF00107.
  
     0.525
ABK71185.1
Hypothetical protein; Identified by Glimmer2; putative.
       0.496
ABK73010.1
Identified by match to protein family HMM PF00857.
  
     0.451
ABK72770.1
Cis-3-chloroacrylic acid dehalogenase, putative; Identified by match to protein family HMM PF01361.
  
     0.423
ABK76137.1
Pyridoxamine 5'-phosphate oxidase family protein; Identified by match to protein family HMM PF01243.
  
     0.413
ABK71184.1
TetR-family protein transcriptional regulator; Identified by match to protein family HMM PF00440.
  
     0.401
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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