Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABK73354.1Conserved hypothetical protein. (406 aa)    
Predicted Functional Partners:
ABK72890.1
Conserved hypothetical protein.
  
     0.772
ABK71204.1
Rmt3 protein.
  
     0.722
ABK71912.1
Conserved hypothetical protein.
  
     0.684
ABK75474.1
Conserved hypothetical protein.
  
     0.674
ABK71989.1
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.669
ABK70577.1
Hypothetical protein; Identified by Glimmer2; putative.
 
     0.623
ABK75720.1
Integral membrane protein DUF6; Identified by match to protein family HMM PF00892.
  
     0.612
ABK73554.1
Gp15 protein.
  
     0.607
ABK74541.1
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.605
ABK72234.1
Conserved hypothetical protein.
  
     0.601
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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