Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
ABK71219.1Transposase; Identified by match to protein family HMM PF01548; match to protein family HMM PF02371. (401 aa)    
Predicted Functional Partners:
ABK70392.1
Transposase, Mutator family protein; Required for the transposition of the insertion element.
 
   
 0.512
ABK70148.1
Identified by match to protein family HMM PF08028.
  
    0.464
ABK72094.1
Identified by match to protein family HMM PF00583.
       0.447
ABK76120.1
Amino acid permease-associated region, putative; Identified by match to protein family HMM PF00324.
       0.447
ABK76183.1
Putative methyltransferase; Identified by match to protein family HMM PF03602; match to protein family HMM TIGR00095.
  
    0.420
ABK75694.1
IS6120, transposase; Required for the transposition of the insertion element.
 
   
 0.402
ABK72574.1
IS6120, transposase; Identified by similarity to SP:P35883; match to protein family HMM PF00872.
 
   
 0.402
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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