ABK74034.1 protein (Mycolicibacterium smegmatis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

ABK74034.1

GAF domain, putative; Identified by match to protein family HMM PF01590. (165 aa)

Predicted Functional Partners:

ABK75795.1

0.758

metH

0.561

ABK69658.1

0.552

ABK71667.1

0.541

ssuD-6

0.541

ribBA

0.498

ABK71907.1

0.468

leuS

0.427

guaA

0.426

ABK75395.1

0.422

Your Current Organism:

Mycolicibacterium smegmatis

NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ABK69658.1	ABK71907.1	MSMEG_6130	MSMEG_3578	Two-component sensor protein; Identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; match to protein family HMM PF05227.	Putative cyclase; Identified by match to protein family HMM PF00211; match to protein family HMM PF00672.	0.791
ABK69658.1	ABK74034.1	MSMEG_6130	MSMEG_4553	Two-component sensor protein; Identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; match to protein family HMM PF05227.	GAF domain, putative; Identified by match to protein family HMM PF01590.	0.552
ABK69658.1	ABK75795.1	MSMEG_6130	MSMEG_2248	Two-component sensor protein; Identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; match to protein family HMM PF05227.	Two-component system sensor kinase; Identified by match to protein family HMM PF00989; match to protein family HMM PF01590; match to protein family HMM PF02518; match to protein family HMM PF07730; match to protein family HMM TIGR00229.	0.986
ABK69658.1	ribBA	MSMEG_6130	MSMEG_3072	Two-component sensor protein; Identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; match to protein family HMM PF05227.	Riboflavin biosynthesis protein ribAB; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.	0.811
ABK71667.1	ABK74034.1	MSMEG_4551	MSMEG_4553	Monoxygenase.	GAF domain, putative; Identified by match to protein family HMM PF01590.	0.541
ABK71667.1	ssuD-6	MSMEG_4551	MSMEG_4552	Monoxygenase.	Nitrilotriacetate monooxygenase component A; Identified by match to protein family HMM PF00296.	0.825
ABK71907.1	ABK69658.1	MSMEG_3578	MSMEG_6130	Putative cyclase; Identified by match to protein family HMM PF00211; match to protein family HMM PF00672.	Two-component sensor protein; Identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; match to protein family HMM PF05227.	0.791
ABK71907.1	ABK74034.1	MSMEG_3578	MSMEG_4553	Putative cyclase; Identified by match to protein family HMM PF00211; match to protein family HMM PF00672.	GAF domain, putative; Identified by match to protein family HMM PF01590.	0.468
ABK71907.1	ABK75795.1	MSMEG_3578	MSMEG_2248	Putative cyclase; Identified by match to protein family HMM PF00211; match to protein family HMM PF00672.	Two-component system sensor kinase; Identified by match to protein family HMM PF00989; match to protein family HMM PF01590; match to protein family HMM PF02518; match to protein family HMM PF07730; match to protein family HMM TIGR00229.	0.945
ABK71907.1	ribBA	MSMEG_3578	MSMEG_3072	Putative cyclase; Identified by match to protein family HMM PF00211; match to protein family HMM PF00672.	Riboflavin biosynthesis protein ribAB; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.	0.959
ABK74034.1	ABK69658.1	MSMEG_4553	MSMEG_6130	GAF domain, putative; Identified by match to protein family HMM PF01590.	Two-component sensor protein; Identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; match to protein family HMM PF05227.	0.552
ABK74034.1	ABK71667.1	MSMEG_4553	MSMEG_4551	GAF domain, putative; Identified by match to protein family HMM PF01590.	Monoxygenase.	0.541
ABK74034.1	ABK71907.1	MSMEG_4553	MSMEG_3578	GAF domain, putative; Identified by match to protein family HMM PF01590.	Putative cyclase; Identified by match to protein family HMM PF00211; match to protein family HMM PF00672.	0.468
ABK74034.1	ABK75395.1	MSMEG_4553	MSMEG_3942	GAF domain, putative; Identified by match to protein family HMM PF01590.	Conserved hypothetical protein.	0.422
ABK74034.1	ABK75795.1	MSMEG_4553	MSMEG_2248	GAF domain, putative; Identified by match to protein family HMM PF01590.	Two-component system sensor kinase; Identified by match to protein family HMM PF00989; match to protein family HMM PF01590; match to protein family HMM PF02518; match to protein family HMM PF07730; match to protein family HMM TIGR00229.	0.758
ABK74034.1	guaA	MSMEG_4553	MSMEG_1610	GAF domain, putative; Identified by match to protein family HMM PF01590.	Glutamine-hydrolyzing GMP synthase; Catalyzes the synthesis of GMP from XMP.	0.426
ABK74034.1	leuS	MSMEG_4553	MSMEG_6917	GAF domain, putative; Identified by match to protein family HMM PF01590.	leucyl-tRNA synthetase; Identified by match to protein family HMM TIGR00396; Belongs to the class-I aminoacyl-tRNA synthetase family.	0.427
ABK74034.1	metH	MSMEG_4553	MSMEG_4185	GAF domain, putative; Identified by match to protein family HMM PF01590.	Methionine synthase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.	0.561
ABK74034.1	ribBA	MSMEG_4553	MSMEG_3072	GAF domain, putative; Identified by match to protein family HMM PF01590.	Riboflavin biosynthesis protein ribAB; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.	0.498
ABK74034.1	ssuD-6	MSMEG_4553	MSMEG_4552	GAF domain, putative; Identified by match to protein family HMM PF01590.	Nitrilotriacetate monooxygenase component A; Identified by match to protein family HMM PF00296.	0.541