ABK76197.1 protein (Mycolicibacterium smegmatis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

ABK76197.1

CBS domain protein; Identified by match to protein family HMM PF00571. (143 aa)

Predicted Functional Partners:

ABK70099.1

0.867

ABK70243.1

0.867

guaA

0.836

ABK76139.1

0.756

ABK74721.1

0.738

ABK70730.1

0.641

ABK73775.1

0.582

ABK70213.1

0.527

dnaG

0.482

ABK70848.1

0.460

Your Current Organism:

Mycolicibacterium smegmatis

NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ABK70099.1	ABK70243.1	MSMEG_3225	MSMEG_6459	Ferredoxin-dependent glutamate synthase 1; Identified by match to protein family HMM PF00310; match to protein family HMM PF01493; match to protein family HMM PF01645; match to protein family HMM PF04898.	Ferredoxin-dependent glutamate synthase 1; Identified by match to protein family HMM PF00310; match to protein family HMM PF01493; match to protein family HMM PF01645; match to protein family HMM PF04898.	0.999
ABK70099.1	ABK70730.1	MSMEG_3225	MSMEG_2467	Ferredoxin-dependent glutamate synthase 1; Identified by match to protein family HMM PF00310; match to protein family HMM PF01493; match to protein family HMM PF01645; match to protein family HMM PF04898.	Transketolase, central region; Identified by match to protein family HMM PF00676; match to protein family HMM PF02779; match to protein family HMM PF02780.	0.676
ABK70099.1	ABK73775.1	MSMEG_3225	MSMEG_4563	Ferredoxin-dependent glutamate synthase 1; Identified by match to protein family HMM PF00310; match to protein family HMM PF01493; match to protein family HMM PF01645; match to protein family HMM PF04898.	Puromycin N-acetyltransferase.	0.751
ABK70099.1	ABK74721.1	MSMEG_3225	MSMEG_3634	Ferredoxin-dependent glutamate synthase 1; Identified by match to protein family HMM PF00310; match to protein family HMM PF01493; match to protein family HMM PF01645; match to protein family HMM PF04898.	Identified by match to protein family HMM PF00478; match to protein family HMM PF00571; match to protein family HMM TIGR01303.	0.518
ABK70099.1	ABK76139.1	MSMEG_3225	MSMEG_4646	Ferredoxin-dependent glutamate synthase 1; Identified by match to protein family HMM PF00310; match to protein family HMM PF01493; match to protein family HMM PF01645; match to protein family HMM PF04898.	Pyruvate synthase; Identified by match to protein family HMM PF01855.	0.970
ABK70099.1	ABK76197.1	MSMEG_3225	MSMEG_4564	Ferredoxin-dependent glutamate synthase 1; Identified by match to protein family HMM PF00310; match to protein family HMM PF01493; match to protein family HMM PF01645; match to protein family HMM PF04898.	CBS domain protein; Identified by match to protein family HMM PF00571.	0.867
ABK70099.1	dnaG	MSMEG_3225	MSMEG_4482	Ferredoxin-dependent glutamate synthase 1; Identified by match to protein family HMM PF00310; match to protein family HMM PF01493; match to protein family HMM PF01645; match to protein family HMM PF04898.	DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication.	0.438
ABK70099.1	guaA	MSMEG_3225	MSMEG_1610	Ferredoxin-dependent glutamate synthase 1; Identified by match to protein family HMM PF00310; match to protein family HMM PF01493; match to protein family HMM PF01645; match to protein family HMM PF04898.	Glutamine-hydrolyzing GMP synthase; Catalyzes the synthesis of GMP from XMP.	0.966
ABK70213.1	ABK73775.1	MSMEG_4565	MSMEG_4563	Oxidoreductase; Identified by match to protein family HMM PF00248.	Puromycin N-acetyltransferase.	0.443
ABK70213.1	ABK76197.1	MSMEG_4565	MSMEG_4564	Oxidoreductase; Identified by match to protein family HMM PF00248.	CBS domain protein; Identified by match to protein family HMM PF00571.	0.527
ABK70243.1	ABK70099.1	MSMEG_6459	MSMEG_3225	Ferredoxin-dependent glutamate synthase 1; Identified by match to protein family HMM PF00310; match to protein family HMM PF01493; match to protein family HMM PF01645; match to protein family HMM PF04898.	Ferredoxin-dependent glutamate synthase 1; Identified by match to protein family HMM PF00310; match to protein family HMM PF01493; match to protein family HMM PF01645; match to protein family HMM PF04898.	0.999
ABK70243.1	ABK70730.1	MSMEG_6459	MSMEG_2467	Ferredoxin-dependent glutamate synthase 1; Identified by match to protein family HMM PF00310; match to protein family HMM PF01493; match to protein family HMM PF01645; match to protein family HMM PF04898.	Transketolase, central region; Identified by match to protein family HMM PF00676; match to protein family HMM PF02779; match to protein family HMM PF02780.	0.676
ABK70243.1	ABK73775.1	MSMEG_6459	MSMEG_4563	Ferredoxin-dependent glutamate synthase 1; Identified by match to protein family HMM PF00310; match to protein family HMM PF01493; match to protein family HMM PF01645; match to protein family HMM PF04898.	Puromycin N-acetyltransferase.	0.751
ABK70243.1	ABK74721.1	MSMEG_6459	MSMEG_3634	Ferredoxin-dependent glutamate synthase 1; Identified by match to protein family HMM PF00310; match to protein family HMM PF01493; match to protein family HMM PF01645; match to protein family HMM PF04898.	Identified by match to protein family HMM PF00478; match to protein family HMM PF00571; match to protein family HMM TIGR01303.	0.518
ABK70243.1	ABK76139.1	MSMEG_6459	MSMEG_4646	Ferredoxin-dependent glutamate synthase 1; Identified by match to protein family HMM PF00310; match to protein family HMM PF01493; match to protein family HMM PF01645; match to protein family HMM PF04898.	Pyruvate synthase; Identified by match to protein family HMM PF01855.	0.970
ABK70243.1	ABK76197.1	MSMEG_6459	MSMEG_4564	Ferredoxin-dependent glutamate synthase 1; Identified by match to protein family HMM PF00310; match to protein family HMM PF01493; match to protein family HMM PF01645; match to protein family HMM PF04898.	CBS domain protein; Identified by match to protein family HMM PF00571.	0.867
ABK70243.1	dnaG	MSMEG_6459	MSMEG_4482	Ferredoxin-dependent glutamate synthase 1; Identified by match to protein family HMM PF00310; match to protein family HMM PF01493; match to protein family HMM PF01645; match to protein family HMM PF04898.	DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication.	0.438
ABK70243.1	guaA	MSMEG_6459	MSMEG_1610	Ferredoxin-dependent glutamate synthase 1; Identified by match to protein family HMM PF00310; match to protein family HMM PF01493; match to protein family HMM PF01645; match to protein family HMM PF04898.	Glutamine-hydrolyzing GMP synthase; Catalyzes the synthesis of GMP from XMP.	0.966
ABK70730.1	ABK70099.1	MSMEG_2467	MSMEG_3225	Transketolase, central region; Identified by match to protein family HMM PF00676; match to protein family HMM PF02779; match to protein family HMM PF02780.	Ferredoxin-dependent glutamate synthase 1; Identified by match to protein family HMM PF00310; match to protein family HMM PF01493; match to protein family HMM PF01645; match to protein family HMM PF04898.	0.676
ABK70730.1	ABK70243.1	MSMEG_2467	MSMEG_6459	Transketolase, central region; Identified by match to protein family HMM PF00676; match to protein family HMM PF02779; match to protein family HMM PF02780.	Ferredoxin-dependent glutamate synthase 1; Identified by match to protein family HMM PF00310; match to protein family HMM PF01493; match to protein family HMM PF01645; match to protein family HMM PF04898.	0.676