Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ABK73818.1Rhodanese domain protein/cystathionine beta-lyase. (518 aa)    
Predicted Functional Partners:
ABK72349.1
ABC nitrate/sulfonate/bicarbonate family protein transporter, periplasmic ligand binding protein.
 
     0.889
ABK74762.1
ABC nitrate/sulfonate/bicarbonate family protein transporter, inner membrane subunit; Identified by match to protein family HMM PF00528.
    
 0.805
ssuB-2
Putative aliphatic sulfonates transport ATP-binding protein SsuB; Part of the ABC transporter complex SsuABC involved in aliphatic sulfonates import. Responsible for energy coupling to the transport system.
  
  
 0.796
metH
Methionine synthase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.
  
 
  0.701
ABK73193.1
Cupin domain protein; Identified by match to protein family HMM PF07883.
 
    0.697
ssuD-7
Nitrilotriacetate monooxygenase component A.
 
  
 0.646
ABK74760.1
AMP-dependent synthetase and ligase; Identified by match to protein family HMM PF00501; match to protein family HMM PF00550.
  
 
 0.610
ABK73623.1
Biotin sulfoxide reductase; Identified by match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM TIGR00509; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 
  
 0.601
ABK72679.1
Toluate 1,2-dioxygenase electron transfer component; Identified by match to protein family HMM PF00106; match to protein family HMM PF00111; match to protein family HMM PF00175; match to protein family HMM PF00970; match to protein family HMM PF07729; match to protein family HMM PF08021.
  
 0.560
ABK75142.1
Cystathionine beta-synthase; Identified by match to protein family HMM PF00291; match to protein family HMM PF00571; match to protein family HMM TIGR01137.
  
 
 0.548
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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