STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABK70813.1Identified by match to protein family HMM PF00441; match to protein family HMM PF08028. (414 aa)    
Predicted Functional Partners:
ABK76066.1
acyl-CoA dehydrogenase.
 
    
0.781
ABK75990.1
Putative 3-hydroxyacyl-CoA dehydrogenase; Identified by match to protein family HMM PF00378; match to protein family HMM PF00725; match to protein family HMM PF02737.
  
 0.762
ABK72349.1
ABC nitrate/sulfonate/bicarbonate family protein transporter, periplasmic ligand binding protein.
 
  
 0.707
etfA
Electron transfer flavoprotein, alpha subunit; Identified by similarity to SP:P38974; match to protein family HMM PF00766; match to protein family HMM PF01012.
 
 0.700
ABK71554.1
Monooxygenase; Identified by match to protein family HMM PF00296.
 
  
 0.697
ssuD-7
Nitrilotriacetate monooxygenase component A.
 
  
 0.673
etfB
Electron transfer flavoprotein, beta subunit; Identified by similarity to SP:O85691; match to protein family HMM PF01012.
 
 
 0.670
ABK73814.1
Alkanesulfonate monooxygenase family protein; Identified by similarity to SP:P40402.
 
    0.661
ABK70103.1
Fatty acid synthase; Identified by match to protein family HMM PF00109; match to protein family HMM PF00698; match to protein family HMM PF01575; match to protein family HMM PF02801.
  
 0.661
ABK71785.1
3-hydroxybutyryl-CoA dehydrogenase; Identified by match to protein family HMM PF00725; match to protein family HMM PF02737.
  
 0.637
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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