Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
ABK70025.1Conserved hypothetical protein. (204 aa)    
Predicted Functional Partners:
ABK75475.1
Peptidase S9, prolyl oligopeptidase; Identified by match to protein family HMM PF00326; match to protein family HMM PF05448.
       0.654
ABK70862.1
Mannose-binding lectin; Identified by match to protein family HMM PF01453; match to protein family HMM PF01476.
 
    0.630
ABK74913.1
Conserved hypothetical protein.
  
     0.573
valS
valyl-tRNA synthetase; Catalyzes the attachment of valine to tRNA(Val). As ValRS can inadvertently accommodate and process structurally similar amino acids such as threonine, to avoid such errors, it has a 'posttransfer' editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA- dependent manner; Belongs to the class-I aminoacyl-tRNA synthetase family. ValS type 1 subfamily.
  
    0.568
ABK72469.1
Saccharopine dehydrogenase; Identified by match to protein family HMM PF03435.
  
    0.551
ABK72578.1
Conserved hypothetical protein.
  
     0.549
ABK73909.1
MaoC like domain protein; Identified by match to protein family HMM PF01575.
 
     0.471
ABK75851.1
Hypothetical protein; Identified by Glimmer2; putative.
       0.457
ABK73580.1
Putative transcriptional regulator; Identified by match to protein family HMM PF00440; match to protein family HMM PF02796.
  
     0.452
ABK73759.1
LysM domain protein; Identified by match to protein family HMM PF01476.
 
     0.440
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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