STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABK71200.1Identified by match to protein family HMM PF06737. (153 aa)    
Predicted Functional Partners:
rip2
Identified by match to protein family HMM PF02163.
      
 0.753
guaA
Glutamine-hydrolyzing GMP synthase; Catalyzes the synthesis of GMP from XMP.
    
  0.690
ABK72326.1
Hypothetical protein; Identified by Glimmer2; putative.
       0.572
rip1
Zinc metalloprotease; A probable intramembrane site-2 protease (S2P) that cleaves type-2 transmembrane proteins within their membrane-spanning domains. Degrades PbpB (PBP3, FtsI) under conditions of oxidatives stress; degradation is inhibited by Wag31-PbpB interaction. Also cleaves anti- sigma factors RskA, RslA and RslM. Site-1 proteases have not yet been identified in this organism; Belongs to the peptidase M50B family.
      
 0.569
ABK70509.1
ABC transporter efflux protein, DrrB family protein; Identified by match to protein family HMM PF01061; match to protein family HMM TIGR00025.
 
   
 0.534
ABK71565.1
Conserved hypothetical protein, putative; Identified by match to protein family HMM PF01323.
  
     0.501
bfrB
Ferritin family protein; Iron-storage protein that displays ferroxidase activity, catalyzing the oxidation of Fe(2+) ions into Fe(3+) ions, that can then be deposited as a ferric-oxide mineral core within the central cavity of the protein complex.
 
  
 0.488
ABK74581.1
Conserved hypothetical protein; Identified by match to protein family HMM PF07332.
  
    0.471
ABK71306.1
Conserved hypothetical protein.
  
 
 0.463
ABK71831.1
Conserved hypothetical protein.
  
 
 0.463
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.