Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABK75418.1Carbohydrate kinase, PfkB, putative; Identified by match to protein family HMM PF00294. (274 aa)    
Predicted Functional Partners:
ABK70442.1
PTS system, Fru family protein, IIABC components; Identified by match to protein family HMM PF00359; match to protein family HMM PF02378; match to protein family HMM PF02379; match to protein family HMM TIGR00829; match to protein family HMM TIGR00848; match to protein family HMM TIGR01427.
    
 0.884
ABK75522.1
Conserved hypothetical protein; Identified by match to protein family HMM PF05976.
  
     0.763
ABK75772.1
Conserved hypothetical protein.
  
 
   0.756
ABK76032.1
Conserved hypothetical protein.
 
     0.752
ABK69833.1
Conserved hypothetical protein.
 
 
 0.748
ABK74862.1
Conserved hypothetical protein.
 
   
 0.739
ABK69959.1
Cutinase superfamily protein; Identified by match to protein family HMM PF01083.
  
   
 0.735
ABK72151.1
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.727
ABK70249.1
Cupin domain protein; Identified by match to protein family HMM PF07883.
 
  
 0.715
ABK73376.1
Conserved hypothetical protein.
  
     0.708
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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