Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ABK74858.1DNA-binding protein. (334 aa)    
Predicted Functional Partners:
ABK70320.1
phytanoyl-CoA dioxygenase; Identified by match to protein family HMM PF05721.
 
     0.905
ABK76139.1
Pyruvate synthase; Identified by match to protein family HMM PF01855.
     
 0.852
ABK71726.1
Ferredoxin; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions.
      
 0.824
ABK70645.1
Sugar ABC transporter ATP-binding protein; Identified by match to protein family HMM PF00005.
 
 0.817
ABK74828.1
Identified by match to protein family HMM PF01261.
 
    0.787
ABK74698.1
Putative oxidoreductase YisS; Identified by match to protein family HMM PF01408; match to protein family HMM PF02894.
 
  
 0.780
ABK75862.1
ABC transporter membrane protein; Identified by match to protein family HMM PF02653; Belongs to the binding-protein-dependent transport system permease family.
 
 0.767
ABK72920.1
Identified by match to protein family HMM PF01261; Belongs to the hyi family.
 
   
 0.748
ABK72676.1
Thioredoxin reductase; Identified by match to protein family HMM PF00070; match to protein family HMM PF00072; match to protein family HMM PF01266; match to protein family HMM PF07992.
  
 0.670
ABK73793.1
D-oliose 4-ketoreductase; Identified by match to protein family HMM PF01408; match to protein family HMM PF02894.
 
  
 0.669
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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