Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABK72920.1Identified by match to protein family HMM PF01261; Belongs to the hyi family. (258 aa)    
Predicted Functional Partners:
gcl
Glyoxylate carboligase; Identified by match to protein family HMM PF00205; match to protein family HMM PF02775; match to protein family HMM PF02776; match to protein family HMM TIGR01504; Belongs to the TPP enzyme family.
  
 
 0.966
ABK70474.1
2-hydroxy-3-oxopropionate reductase; Identified by match to protein family HMM PF03446; match to protein family HMM PF03807; match to protein family HMM TIGR01505.
  
 
 0.963
ABK74828.1
Identified by match to protein family HMM PF01261.
 
  
 0.906
ABK74698.1
Putative oxidoreductase YisS; Identified by match to protein family HMM PF01408; match to protein family HMM PF02894.
 
  
 0.876
ABK70320.1
phytanoyl-CoA dioxygenase; Identified by match to protein family HMM PF05721.
 
    0.832
ABK73793.1
D-oliose 4-ketoreductase; Identified by match to protein family HMM PF01408; match to protein family HMM PF02894.
 
  
 0.831
ABK71302.1
6-phosphogluconate dehydrogenase, NAD-binding; Identified by match to protein family HMM PF03446; match to protein family HMM PF03807.
  
 
 0.772
ABK74858.1
DNA-binding protein.
 
   
 0.748
ABK74579.1
Glyoxylate reductase; Identified by match to protein family HMM PF00389; match to protein family HMM PF02826; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
  
 
 0.687
ABK72228.1
IolE protein; Identified by match to protein family HMM PF01261.
 
  
 0.659
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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