STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABK75862.1ABC transporter membrane protein; Identified by match to protein family HMM PF02653; Belongs to the binding-protein-dependent transport system permease family. (352 aa)    
Predicted Functional Partners:
ABK74574.1
Sugar ABC transporter substrate-binding protein; Identified by match to protein family HMM PF00532.
 
 0.981
ABK70645.1
Sugar ABC transporter ATP-binding protein; Identified by match to protein family HMM PF00005.
 
 0.979
ABK74623.1
ABC transporter ATP-binding protein; Identified by match to protein family HMM PF00005.
 
 0.864
ABK72609.1
Ribose ABC transporter, periplasmic binding protein; Identified by match to protein family HMM PF00532.
 
 0.838
ABK70633.1
D-ribose-binding periplasmic protein; Identified by match to protein family HMM PF00532.
 
 0.835
xypA
Periplasmic sugar-binding proteins; Part of an ABC transporter complex likely involved in xylitol import. Binds xylitol.
 
 0.825
thpA
Sugar-binding transcriptional regulator, LacI family protein; Part of an ABC transporter complex involved in D-threitol import. Binds D-threitol. Functions in the transport for the degradation pathway of D-threitol, that allows M.smegmatis to grow on this compound as the sole carbon source; Belongs to the bacterial solute-binding protein 2 family.
 
 0.822
ABK69646.1
D-ribose-binding periplasmic protein RbsB; Identified by match to protein family HMM PF00532.
 
 0.813
ABK70925.1
ABC-type sugar transport system ATPase component; Identified by match to protein family HMM PF00005.
 
 0.812
ABK71021.1
ABC transporter ATP-binding protein; Identified by match to protein family HMM PF00005.
 
 0.801
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.