Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABK72466.1Sugar kinase, ribokinase family protein; Identified by match to protein family HMM PF00294. (325 aa)    
Predicted Functional Partners:
ABK73092.1
Protein IolB; Identified by match to protein family HMM PF06845.
 
 
 0.997
ABK71707.1
Deoxyribose-phosphate aldolase superfamily protein; Identified by match to protein family HMM PF01791.
 
 
 0.925
ABK72686.1
IolD protein; Identified by match to protein family HMM PF00205; match to protein family HMM PF02775; match to protein family HMM PF02776; Belongs to the TPP enzyme family.
 
  
 0.923
ABK71510.1
GntR-family protein transcriptional regulator; Identified by match to protein family HMM PF00392; match to protein family HMM PF07702.
 
  
 0.899
ABK70442.1
PTS system, Fru family protein, IIABC components; Identified by match to protein family HMM PF00359; match to protein family HMM PF02378; match to protein family HMM PF02379; match to protein family HMM TIGR00829; match to protein family HMM TIGR00848; match to protein family HMM TIGR01427.
    
 0.884
ABK74828.1
Identified by match to protein family HMM PF01261.
 
 
 0.852
ABK72228.1
IolE protein; Identified by match to protein family HMM PF01261.
 
 
 0.852
ABK74574.1
Sugar ABC transporter substrate-binding protein; Identified by match to protein family HMM PF00532.
 
  
 0.819
ABK74698.1
Putative oxidoreductase YisS; Identified by match to protein family HMM PF01408; match to protein family HMM PF02894.
 
 
 0.814
iolG
Myo-inositol 2-dehydrogenase; Involved in the oxidation of myo-inositol (MI) to 2-keto-myo- inositol (2KMI or 2-inosose).
 
 
 0.814
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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