Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABK72717.1Identified by match to protein family HMM PF01152. (131 aa)    
Predicted Functional Partners:
ABK74424.1
Identified by match to protein family HMM PF00128.
      0.940
ABK72405.1
Conserved hypothetical protein; Identified by match to protein family HMM PF02566.
      0.833
ABK70858.1
Globin; Identified by match to protein family HMM PF01152.
  
   
 0.708
ABK72856.1
Identified by match to protein family HMM PF01844.
       0.587
ABK71565.1
Conserved hypothetical protein, putative; Identified by match to protein family HMM PF01323.
  
  
 0.566
ABK73349.1
Conserved hypothetical protein.
       0.520
ABK72404.1
Conserved hypothetical protein.
       0.520
ccsB
Cytochrome c-type biogenesis protein CcsB; Identified by match to protein family HMM PF01578; match to protein family HMM TIGR03144.
 
   
 0.491
ABK74914.1
Cytochrome c oxidase subunit 2; Identified by match to protein family HMM PF00116.
  
     0.489
ABK71330.1
Hypothetical protein; Identified by Glimmer2; putative.
  
  
 0.483
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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