Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABK72295.1Identified by match to protein family HMM PF03734. (400 aa)    
Predicted Functional Partners:
crgA
Putative membrane protein; Involved in cell division; Belongs to the CrgA family.
  
   
 0.599
ABK69603.1
Caax amino protease family protein; Identified by match to protein family HMM PF02517.
 
   
 0.596
ABK74802.1
Methionine synthase, vitamin-B12 independent; Identified by match to protein family HMM PF01717.
  
     0.594
ABK69964.1
Conserved hypothetical protein; May play a role in the intracellular transport of hydrophobic ligands.
  
    0.589
ABK70790.1
Transglycosylase; Identified by match to protein family HMM PF00905; match to protein family HMM PF00912; match to protein family HMM PF03793.
 
  
 0.566
ABK75672.1
Probable conserved integral membrane protein; Identified by match to protein family HMM PF02517.
     
 0.565
ABK75508.1
Abortive infection protein; Identified by match to protein family HMM PF02517.
     
 0.565
ABK72472.1
DNA polymerase III, delta subunit; Identified by match to protein family HMM PF06144.
  
    0.552
ABK76005.1
Conserved hypothetical protein.
 
    0.543
ABK75622.1
Conserved hypothetical protein.
  
    0.533
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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