Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABK75398.1ABC transporter permease protein; Identified by match to protein family HMM PF00528. (267 aa)    
Predicted Functional Partners:
ABK73110.1
ABC transporter binding protein; Identified by match to protein family HMM PF01547.
 
 0.999
ABK71505.1
ABC transporter ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM TIGR01187; Belongs to the ABC transporter superfamily.
 
 0.998
ABK74243.1
ABC transporter permease protein; Identified by match to protein family HMM PF00528.
 
0.996
ABK73031.1
Polyamine-binding lipoprotein; Identified by match to protein family HMM PF01547; match to protein family HMM TIGR01409.
 0.990
ABK71092.1
Sulfate/thiosulfate import ATP-binding protein CysA 2; Identified by match to protein family HMM PF00005; match to protein family HMM PF03459; Belongs to the ABC transporter superfamily.
 
 0.989
ABK70698.1
Polyamine ABC transporter permease protein; Identified by match to protein family HMM PF00528.
 0.986
potA-2
Spermidine/putrescine ABC transporter ATP-binding subunit; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Spermidine/putrescine importer (TC 3.A.1.11.1) family.
 
 0.982
ABK74220.1
Polyamine ABC transporter permease protein; Identified by match to protein family HMM PF00528.
 0.964
potA
Putrescine transport ATP-binding protein PotG; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system.
 
 0.960
ABK70595.1
ABC transporter, membrane spanning protein; Identified by match to protein family HMM PF00528.
 
 
 0.956
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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