STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABK72914.1Virulence factor mce family protein; Identified by match to protein family HMM PF02470. (158 aa)    
Predicted Functional Partners:
ABK74987.1
Virulence factor; Identified by match to protein family HMM PF02470; match to protein family HMM TIGR00996.
 
  
 0.972
ABK71552.1
ABC-transporter integral membrane protein; Identified by match to protein family HMM PF02405.
 
 
 0.970
ABK72451.1
Conserved hypothetical protein; Identified by match to protein family HMM PF02405.
 
 
 0.965
ABK70968.1
Virulence factor mce family protein; Identified by match to protein family HMM PF02470; match to protein family HMM TIGR00996.
 
  
 0.926
ABK73142.1
Virulence factor mce family protein; Identified by match to protein family HMM PF02470; match to protein family HMM TIGR00996.
 
  
 0.925
ABK69741.1
Virulence factor mce family protein; Identified by match to protein family HMM PF02470; match to protein family HMM TIGR00996.
 
  
 0.923
ABK73542.1
Mce-family protein mce1f; Identified by match to protein family HMM PF02470; match to protein family HMM TIGR00996.
 
  
 0.919
ABK75686.1
Virulence factor Mce family protein; Identified by match to protein family HMM PF02470; match to protein family HMM TIGR00996.
 
  
0.904
ABK75748.1
Conserved hypothetical protein; Identified by match to protein family HMM PF02405.
 
 
 0.894
ABK71797.1
Conserved hypothetical protein; Identified by match to protein family HMM PF02405.
 
 
 0.885
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.