Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABK71552.1ABC-transporter integral membrane protein; Identified by match to protein family HMM PF02405. (282 aa)    
Predicted Functional Partners:
ABK72533.1
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
 
 0.981
ABK75686.1
Virulence factor Mce family protein; Identified by match to protein family HMM PF02470; match to protein family HMM TIGR00996.
 
 0.975
ABK74987.1
Virulence factor; Identified by match to protein family HMM PF02470; match to protein family HMM TIGR00996.
 
 0.974
ABK72914.1
Virulence factor mce family protein; Identified by match to protein family HMM PF02470.
 
 0.972
ABK73028.1
Mce-family protein mce3c; Identified by match to protein family HMM PF02470; match to protein family HMM TIGR00996.
 
 0.921
ABK72451.1
Conserved hypothetical protein; Identified by match to protein family HMM PF02405.
 
 
0.921
ABK75818.1
Mce-family protein mce1f; Identified by match to protein family HMM PF02470; match to protein family HMM TIGR00996.
 
 0.919
ABK75309.1
Virulence factor mce family protein; Identified by match to protein family HMM PF02470; match to protein family HMM TIGR00996.
 
 0.918
ABK75590.1
Virulence factor Mce family protein, putative; Identified by match to protein family HMM PF02470; match to protein family HMM TIGR00996.
 
 0.909
ABK73753.1
Virulence factor mce family protein; Identified by match to protein family HMM PF02470; match to protein family HMM TIGR00996.
 
 0.904
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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