Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABK74000.1Conserved hypothetical protein; Identified by match to protein family HMM PF00296. (303 aa)    
Predicted Functional Partners:
ABK71696.1
Conserved hypothetical protein; Identified by match to protein family HMM PF07045.
 
    0.817
ABK76006.1
Conserved hypothetical protein; Identified by match to protein family HMM PF00296.
  
    0.741
ABK72828.1
Conserved hypothetical protein.
  
     0.730
ABK72942.1
Monooxygenase; Identified by match to protein family HMM PF00296.
  
     0.668
ABK70757.1
Conserved hypothetical protein; Identified by match to protein family HMM PF00296.
  
     0.661
ABK75448.1
Cytochrome p450; Identified by match to protein family HMM PF00067; Belongs to the cytochrome P450 family.
  
 
  0.651
ABK71096.1
Conserved domain protein.
     
 0.625
ABK70844.1
Conserved hypothetical protein; Identified by match to protein family HMM PF00296.
  
     0.615
ABK72224.1
5,10-methylenetetrahydromethanopterin reductase; Identified by match to protein family HMM PF00296.
  
     0.596
ABK70857.1
5,10-methylenetetrahydromethanopterin reductase.
  
     0.570
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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