Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
ABK76161.1Hypothetical protein; Identified by Glimmer2; putative. (259 aa)    
Predicted Functional Partners:
ABK71234.1
Putative IclR family protein transcriptional regulator; Identified by match to protein family HMM PF01614.
      
 0.812
ABK75498.1
Glycerol operon regulatory protein; Identified by match to protein family HMM PF01614.
      
 0.812
ABK69821.1
Transcriptional regulator, IclR family protein; Identified by match to protein family HMM PF01614.
      
 0.812
ABK74815.1
Transcriptional regulator, IclR family protein; Identified by match to protein family HMM PF01614.
      
 0.812
ABK74537.1
IclR-family protein transcriptional regulator; Identified by match to protein family HMM PF01614.
      
 0.812
ABK71137.1
Identified by match to protein family HMM PF01614.
      
 0.812
ABK74116.1
Putative transcriptional regulator; Identified by match to protein family HMM PF01614.
      
 0.812
ABK71376.1
Transcriptional regulator, IclR family protein; Identified by match to protein family HMM PF01614.
      
 0.812
ABK70924.1
Transcriptional regulator, IclR family protein; Identified by match to protein family HMM PF01614.
      
 0.812
ABK70549.1
Putative IclR family protein transcriptional regulator; Identified by match to protein family HMM PF01614.
      
 0.812
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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