Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
ABK74348.1Transcriptional repressor, TetR family protein, putative; Identified by match to protein family HMM PF00440. (219 aa)    
Predicted Functional Partners:
ABK76218.1
Aminoglycoside phosphotransferase; Identified by match to protein family HMM PF01636.
 
  
 0.817
ABK73073.1
Alcohol dehydrogenase, zinc-binding; Identified by match to protein family HMM PF00107.
  
  
 0.789
ABK69635.1
Putative acyl-CoA dehydrogenase; Identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF08028.
       0.782
ABK75522.1
Conserved hypothetical protein; Identified by match to protein family HMM PF05976.
 
    0.589
ABK74090.1
Integral membrane protein.
 
  
 0.563
ABK76161.1
Hypothetical protein; Identified by Glimmer2; putative.
       0.543
ABK70866.1
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.510
ABK73604.1
Cytochrome P450; Identified by match to protein family HMM PF00067; Belongs to the cytochrome P450 family.
       0.496
ABK69755.1
Transcriptional regulator, TetR family protein, putative.
  
     0.494
ABK73376.1
Conserved hypothetical protein.
 
    0.474
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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